Press Coverage
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Commentary on Schwörer et al. Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals. Nature 540, 428-432 (2016):
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Commentary on Mathelier et al. DNA shape features improve transcription factor binding site predictions in vivo. Cell Syst. 3, 278-286 (2016): Preview by Gary D. Stormo & Basab Roy DNA Structure Helps Predict Protein Binding. Cell Syst. 3, 216-218 (2016). |
| Our recent Nat. Commun. paper with the Meijsing group is highlighted by a press release of the Max Planck Society "DNA structure influences the function of transcription factors" |
| Our recent Dror et al. BioEssays paper is highlighted in the issue of the journal with a commentary "Transcription factor binding: More than just motif recognition" |
Our recent Abe et al. Cell paper is highlighted by a commentary Nature Reviews Genetics "Shaping up transcription factor binding"and a USC press release "Patterns and Shapes" |
Our recent Zhou et al. PNAS paper is highlighted by a commentary in PNAS "Shapely DNA attracts the right partner" and a USC press release "Patterns and Shapes" |
Our recent Levo et al. Genome Research paper is highlighted by a commentary in Nature Genetics "Fine-tuning of transcription factor binding" and a USC press release "Patterns and Shapes" |
Our recent Slattery et al. Cell paper is highlighted by commentaries in Nature Reviews Genetics "Gene Regulation: Resolving Transcription Factor Binding" and Cell "A Partner Evokes Latent Differences in Hox Proteins". |
Our recent Slattery et al. Cell paper is highlighted by USC News "The Shape of Things to Come" and Columbia News "Scientists Explain How Transcription Factors Know Which Genes to Turn on". |
Commentary on Slattery et al. Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins Cell 147, 1270-1282 (2011) : |
Remo is introduced by genomeweb as one of their Annual Young Investigators. |
Commentary on Kitayner et al. Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs Nat. Struct. Mol. Biol. 17, 423–429 (2010) : |
Commentaries on Rohs et al. The role of DNA shape in protein-DNA recognition Nature 461, 1248-1253 (2009) : |
Commentary on Joshi et al. Functional specificity of a Hox protein mediated by the recognition of minor groove structure Cell 131, 530-543 (2007) : |
Commentary on Rohs et al. Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites Structure 13, 1499-1509 (2005) : |
Article on Remo's earlier career (in German) : |
Articles on a conference organized by Remo (in German) : |
Articles on Remo being awarded the Humboldt Prize (in German) : |
Recent News
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November 30, 2016 Our new Nature paper with the Leibniz Institute on Aging reveals role of Hoxa9 in muscle stem cell aging. |
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November 8, 2016 Our recent Dror et al. Genome Res. paper received a RECOMB/ISCB Top-10 Paper Award in regulatory and systems genomics in 2015/16. |
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August 31, 2016 Carolina defended her Ph.D. thesis with flying colors. Congratulations, Carolina! |
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August 18, 2016 Our new paper proves the impact of DNA shape on in vivo TF binding based on 400 human ChIP-seq datasets. |
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August 16, 2016 Remo was promoted to Full Professor of Biological Sciences at USC. Fight on! |
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July 14, 2016 Remo was elected Head of Computational Biology and Bioinformatics at USC. Fight on! |
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June 6, 2016 Lin defended his Ph.D. thesis with flying colors. Congratulations, Lin! |
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May 4, 2016 Tsu-Pei received a competitive Enhancement Fellowship from the USC Graduate School. Congratulations, Tsu-Pei! |
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May 3, 2016 Lin received the highest honor for a USC graduate student, the PhD Achievement Award. Congratulations, Lin! |
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May 3, 2016 Remo was introduced as the incoming Vice Chair of the Department of Biological Sciences and Director of Biological Sciences Studies. |
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April 20, 2016 Remo presented our recent Zhou et al. PNAS paper as one of the few selected Highlights at the recent RECOMB conference. |
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April 19, 2016 Carolina received the Harrison M. Kurtz Award and Tsu-Pei the William E. Trusten Award. Congrats, Carolina and Tsu-Pei!. |
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April 6, 2016 Remo received the USC Mentoring award in the category mentoring of graduate students. Best award ever! |
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March 16, 2016 Remo received the ACS OpenEye Outstanding Junior Faculty Award in Computational Chemistry at the American Chemical Society National Meeting. |
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January 28. 2016 Remo received Tenure at USC and was promoted to Associate Professor. Fight on! |
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>November 18, 2015 Our recent Abe et al. Cell and Zhou et al. PNAS papers were voted as RECOMB/ISCB Top Papers in regulatory and systems genomics in 2014/15. |
| July 9, 2015 Our latest Genome Research paper relates TF binding to DNA motif environment. Congratulations, Iris! |
| July 2, 2015 Arg and His read DNA shape - Lys can also do the trick. Our new paper appeared in Nat. Commun. |
| June 26, 2015 Remo co-organized a successful and fully funded BIRS workshop on protein-DNA recognition in Oaxaca, Mexico. |
| June 3, 2015 We published a News & View article in Nat. Struct. Mol. Biol. on the secrets of sex determination. |
| May 18, 2015 Lin receives a prestigious international award, the Dan David Prize Scholarship, at Tel Aviv University. Congradulations, Lin! |
| May 5, 2015 A collaborative paper with the Paro group published in Cell Rep. shows that DNA shape is predictive of replication origins. |
| April 28, 2015 Our Genome Res. paper with Segal lab is highlighted in Nature Genetics. |
| April 21, 2015 Carolina receives the William Trusten Award and Lin receives the Harrison Kurtz Award from the Dept. of Biological Science. Congradulations, Carolina and Lin! |
| April 17, 2015 Our latest Cell paper that deconvolves DNA shape and sequence readout is highlighted in Nature Reviews Genetics. |
| April 6, 2015 Our recent PNAS paper on the quantitative modeling of TF binding specificities is discussed in a commentary in PNAS. |
| April 2, 2015 A USC press release highlights our recent papers in Cell, PNAS, and Genome Research. |
| April 2, 2015 Paper that deconvolves the recognition of DNA shape from sequence is published in Cell. Congratulations, Iris and Lin! |
| March 11, 2015 Paper on TF specificity determinants outside the core motif in collaboration with the Segal lab is published in Genome Research. |
| March 9, 2015 Paper on the quantitative modeling of TF binding specificities using DNA shape is published in PNAS. Congratulations, Tianyin! |
| January 1, 2015 Paper on genome browser database for DNA shape annotation published in NAR. Congratulations, Tsu-Pei! |
| November 13, 2014 Two of our recent papers, Yang et al. NAR and Barozzi et al. Mol. Cell, received RECOMB/ISCB Top-10 Paper Awards in the field of Regulatory and Systems Genomics. |
| October 14, 2014 Review article on DNA methylation and its effect on protein-DNA binding published in Brief Funct. Genomics. |
| September 26, 2014 Tianyin successfully defends his Ph.D thesis. Congratulations and good luck at Google! |
| September 4, 2014 Remo was awarded an NSF grant for studies of human paralogous TFs. |
| August 14, 2014 Feature Review on how TFs read the genome published in Trends Biochem. Sci. as a cover article. |
| May 8, 2014 Paper with Natoli group on co-binding of TFs and nucleosomes published in Molecular Cell with Lin as a co-author. |
| May 7, 2014 Tianyin receives the university-wide Ph.D. Achievement Award. Congratulations, Tianyin, for this exceptional honor! |
| April 30, 2014 Carolina is awarded a WiSE Merit Fellowship for Ph.D. students who demonstrate exceptional work. Congratulations, Carolina! |
| April 22, 2014 Tianyin receives the Harrison Kurtz Award for the most outstanding Ph.D. student in the biological sciences. Congratulations, Tianyin! |
| January 28, 2014 NIGMS awards Remo an NIH R01 grant for studies of the genome by integrating DNA sequence and shape. |
| January 1, 2014 NAR Breakthrough Article on TFBSshape database published as NAR cover story. |
| January 1, 2014 Two collaborative articles on p53 highlighted on year-round NAR cover for 2014. |
| December 4, 2013 USC news on recent Trio of Awards for three of our recent publications. |
| November 30, 2013 Paper with Peter Qin's group on EPR studies of DNA target sites appears in NAR. |
| November 13, 2013 Two of our recent papers, Gordân et al. Cell Reports and Lazarovici et al. PNAS, received RECOMB/ISCB Top-10 Paper Awards in the field of Regulatory and Systems Genomics. |
| November 7, 2013 Paper on motif database for DNA shape was published as an NAR Breakthrough Article. Congratulations, Lin! |
| September 27, 2013 Paper on homeodomain-DNA recognition has appeared in NAR. Congratulations, Iris! |
| September 25, 2013 Remo was awarded an NIH U01 multi-PI grant to build a genotype-to-phenotype map for early Drosophila embryogenesis utilizing DNA shape. |
July 26, 2013 |
July 17, 2013 |
July 16, 2013 |
July 8, 2013 |
June 10, 2013 |
May 22, 2013 |
May 9, 2013 |
April 4, 2013 |
April 1, 2013 |
March 28, 2013 |
February 14, 2013 |
January 1, 2013 |
November 13, 2012 |
November 7, 2012 |
October 30, 2012 |
October 24, 2012 |
October 13, 2012 |
April 5, 2012 |
February 12, 2012 |
January 12, 2012 |
December 23, 2011 |
December 16, 2011 |
December 16, 2011 |
December 16, 2011 |
December 8, 2011 |
December 6, 2011 |
November 1, 2011 |
May 12, 2011 |
February 24, 2011 |
December 16, 2010 |
Recent Presentations
| December 16, 2016 Keynote Seminar, Biozentrum, Faculty of Biology, Ludwig Maximilians University, Munich, Germany |
| November 21, 2016 Keck School of Medicine Seminar, University of Southern California, Los Angeles, CA |
| November 16, 2016 Bridge@USC Science Faculty Luncheon, University of Southern California, Los Angeles, CA |
| August 21-25, 2016 Symposium on Modeling Water and Solvation in Biochemistry: Developments and Applications, American Chemical Society National Meeting, Philadelphia, PA |
| July 21, 2016 Institute Colloquium, Leibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany |
| July 5-8, 2016 Meeting on Measuring and Modeling Quantitative Sequence-Function Relationships, Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, NY |
| April 17-21, 2016 RECOMB 2016 Conference, Santa Monica, CA |
| March 23, 2016 Leibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany |
| March 15-19, 2016 CSHL Meeting on Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor Laboratory, NY |
| March 7-10, 2016 Workshop on Regulatory Genomics and Epigenomics, Simons Institute for the Theory of Computing, UC Berkeley, Berkeley, CA< |
| February 5-7, 2016 Bridge@USC and Michelson Center for Convergent Biosciences Retreat, Catalina Island, CA |
| January 31- February 5, 2016 Epigenomics 2016 Meeting, Rio Mar, Puerto Rico |
| January 19, 2016 Bioinformatics and Computational Biology Research Center, Cedars-Sinai Medical Center, Los Angeles, CA |
| &June 22-26, 2015 Banff International Research Station Workshop "Rules of Protein-DNA Recognition: Compuatational & Experimental Advances", Oaxaca, Mexico |
| June 9-13, 2015 The 19th Conversation on Biomolecular Structure & Dynamics, Albany, NY |
| April 9, 2015 Program in Bioinformatics, Boston University, Boston, MA |
| March 25, 2015 Bioinformatics & Computational Biology Program, Iowa State University, Ames, IA |
| February 27, 2015 Program in Computational Biology, Carnegie Mellon University & University of Pittsburgh, Pittsburgh, PA |
| February 9, 2015 Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany |
| December 5-9, 2014 4th Zing Nucleic Acids Conference, Cancun, Mexico |
| November 17, 2014 Center for Genomic and Computational Biology, Duke University, Durham, NC |
| November 9-14, 2014 RECOMB/ISCB Conference on Regulatory & Systems Genomics, San Diego, CA |
| September 18, 2014 Intersection Seminar, Department of Biological Sciences, University of Southern California, Los Angeles, CA |
| August 10-14, 2014 Symposium "Modeling the effects of water and solvation in biological systems: Developments and applications", 248th National Meeting of the American Chemical Society, San Francisco, CA |
| June 22-26, 2015 Banff International Research Station Workshop "Rules of Protein-DNA Recognition: Compuatational & Experimental Advances", Oaxaca, Mexico |
| June 9-13, 2015 The 19th Conversation on Biomolecular Structure & Dynamics, Albany, NY |
| April 9, 2015 Program in Bioinformatics, Boston University, Boston, MA |
| March 25, 2015 Bioinformatics & Computational Biology Program, Iowa State University, Ames, IA |
| February 27, 2015 Program in Computational Biology, Carnegie Mellon University & University of Pittsburgh, Pittsburgh, PA |
| February 9, 2015 Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany |
| July 16-19, 2014 Zing Conference on Protein Folding, Punta Cana, Dominican Republic |
| July 12, 2014 Regulatory Genomics Special Interest Group, ISMB, Boson, MA |
| June 9, 2014 Department of Systems Biology, Columbia University, New York, NY |
| May 22, 2014 Department of System Biology, Harvard Medical School, Boston, MA |
| May 20, 2014 Center for Computational Molecular Biology, Brown University, Providence, RI |
| May 5, 2014 Department of Biochemistry, University of Wisconsin-Madison, Madison, WI |
| April 23, 2014 Department of Genome Sciences, University of Washington, Seattle, WA |
| April 7, 2014 Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM |
| March 20, 2014 Department of Genetics, Washington University, St. Louis, MO |
June 16-21, 2013 |
June 11-15, 2013 |
May 26-29, 2013 |
January 8-11, 2013 |
November 12-15, 2012 |
July 14, 2012 |
July 13, 2012 |
March 29-April 1, 2012 |
March 25-28, 2012 |
January 23, 2012 |
January 10-15, 2012 |
December 15-16, 2011 |
November 16, 2011 |
October 7, 2011 |
September 26, 2011 |
June 14-18, 2011 |
April 4-6, 2011 |
February 20, 2011 |
February 17, 2011 |
February 16, 2011 |
February 16, 2011 |
February 15, 2011 |
February 14, 2011 |
February 7-11, 2011 |
January 29-30, 2011 |
January 10, 2011 |
December 13-14, 2010 |
December 10-11, 2010 |
December 7, 2010 |
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